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histo SOPs

Standard operating procedures for histopathology imaging work.

  • Histo preprocessing libvips container performance — why VIPS_CONCURRENCY must be pinned in containers, the cpu/memory operating point for histo-preprocessing, and two still-open virdx-ome bugs (full-array materialization; JPEG-only compression corrupting masks).
  • Viseg segmentation inference — the current viseg.inference API, anatomy label map, binarize_mask, and resolving weights via ClearML.

Related: WSI tiles are served by dashboard-api, documented in Dashboard histo tile serving.

See also projects/ for the unmerged hio S3-first storage redesign — not part of the current I/O path, but don’t independently re-propose an S3-backed storage layer without reading it first.

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