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2026-08-28 vxData domain representation upgrades

Regenerated the HistoDomainRep v2 Alembic migration, merged main, and aligned vxData package versions.

Work Done

  • Updated mono PR #350 (paulhager/histo-domain-rep-v2).
  • Merged current origin/main into the branch without conflicts.
  • Replaced the hand-written HistoDomainRep v2 migration with a real alembic revision --autogenerate revision generated against PostgreSQL at revision 9a2a50fe3707.
  • Bumped vxdata-schemas, vxdata-sdk, and vxdata-api together from 3.1.0 to 3.2.0 for the additive schema/API feature.
  • Validated migration upgrade, schema drift check, downgrade, and re-upgrade on a fresh PostgreSQL database.
  • Ran schemas, SDK, and API lint/typecheck/tests plus the monorepo boundary check. Pushed commit 38e0425a to the PR branch.
  • Reviewed the complete PR and submitted a changes-requested review. The Alembic migration is sound, but TISSUE_GLEASON_CELL currently validates without its four v2 output/model references, contradicting the bundle’s completeness-marker contract. Also noted that older 3.1 response models reject the new Literal values, so the rollout must upgrade consumers first even though a minor bump matches repository precedent.

Lessons Learned: Pitfalls

  • The branch already contained an older merge from main, but was still 21 commits behind current origin/main; always fetch before judging merge state.
  • Ruff in apps/vxdata-api is configured with include = ["src"], so its project-wide format/lint task reports no migration files. Alembic’s generated migration formatting therefore stays as generated.
  • Unrelated untracked files were present in the primary checkout. All staging had to use explicit paths.

Lessons Learned: Improvements

  • Document a short migration regeneration recipe that creates an isolated temporary PostgreSQL database, upgrades it to the migration’s parent revision, then runs alembic revision --autogenerate.
  • Add a reusable migration validation task that performs upgrade, alembic check, downgrade, and re-upgrade against ephemeral PostgreSQL.
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